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Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes : Performance evaluation of the new REGA version 3 and seven other tools

Background: To investigate differences in pathogenesis, diagnosis and resistance pathways between HIV-1 subtypes, an accurate subtyping tool for large datasets is needed. We aimed to evaluate the performance of automated subtyping tools to classify the different subtypes and circulating recombinant...

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Detalles Bibliográficos
Autores Principales: Pineda-Peña, Andrea-Clemencia, Rodrigues Faria, Nuno, Imbrechts, Stijn, Libin, Pieter, Barroso Abecasis, Ana, Deforche, Koen, Gómez-López, Arley, Camacho, Ricardo J., Oliveira, Tulio de, Vandamme, Anne-Mieke
Formato: Artículo (Article)
Lenguaje:Inglés (English)
Publicado: 2013
Materias:
Crf
Hiv-1
Phylogenetic Analysis
Sensitivity
Subtypes
Subtyping
VIH
Patogenicidad
Filogenia
Human Immunodeficiency Virus Proteinase
Rna Directed Dna Polymerase
Article
Automation
Cladistics
Computer Program
Controlled Study
Gene Sequence
Human Immunodeficiency Virus 1
Intermethod Comparison
Nonhuman
Phylogeny
Priority Journal
Reproducibility
Sensitivity And Specificity
Statistical Analysis
Structural Gene
Virus Genome
Virus Recombinant
Virus Typing
Circulating Recombinant Forms
Crfs
Lanl
Los Alamos Dataset
Manual Phylogenetic Analysis
Mphy
Nts
Nucleotides
Pr
Protease
Rega Hiv Subtyping Tool Version 2
Rega Hiv Subtyping Tool Version 3
Regav2
Regav3
Reverse Transcriptase
Rt
Unique Recombinant Forms
Urfs
Cluster Analysis
Computational Biology
Databases, Genetic
Hiv Infections
Humans
Molecular Typing
Public Health Surveillance
Reproducibility Of Results
Acceso en línea:http://repository.urosario.edu.co/handle/10336/18729

Internet

http://repository.urosario.edu.co/handle/10336/18729

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